Showing posts with label yeast. Show all posts
Showing posts with label yeast. Show all posts

Jan 24, 2023

Basics. YPS media, recipe, yeast info

 YPS

In order to grow a healthy SinScoby YPS media is needed. YPS is a type of Yeast media, the acronym stands for Yeast Peptone Sucrose.
  • 5g yeast extract
  • 10g peptone
  • 10g sucrose or sugar
  • 500ml distilled water

  • First step measure everything, then put all the ingredients in a glass bottle, shake it until no lumps of dry ingredients are noticeable.  Remove the bottle cap wrap it in foil, top the bottle with a piece of foil, add the autoclave tape as it is a process indicator for steam sterilizers. Put the bottle and bottle cap in the autoclave (machine that applies high-temperature steam to sterilize objects).



Distilled water



Peptone, this one is animal origin

Since there was no sucrose available in the lab we used regular sugar.


Though autoclave tape may have changed color during the sterilization process, this does not necessarily mean that an item is fully sterile. The tape will change upon exposure to the desired temperature it is indicated for. However, for proper steam sterilization to occur, the entire item needs to reach and maintain a temperature of 121 degrees Celsius for 15 to 20 minutes to ensure the items' sterility.


Note that autoclave tape and the indicators do not prove that the sterilization process has killed organisms. Instead, they demonstrate that the autoclave has reached a temperature of 121 degrees Celsius. Environmental, Health and Safety recommends that you do not use autoclave tape as the only indicator of decontamination or sterilization.

When using autoclave tape, attach it to the exterior of the item you want to sterilize. Depending on the kind of autoclave tape you use, the tape will change to a specific color.





Yeasts are eukaryotic microorganisms whose genomes have been comprehensively studied and some have been sequenced. They are relatively easy to grow under laboratory conditions. Moreover, despite their small genome size, they display cellular features and processes that are highly conserved amongst most eukaryotes. For instance, they have membrane-bound organelles, cytoskeleton, nuclear DNA, and transcription mechanisms that are similar to those found in higher eukaryotes. Furthermore, yeasts have many well-characterized secretory proteins and pheromones. Several yeast genes involved in protease processing and secretion have also been identified. Thus, yeasts can be used for several eukaryotic gene and protein studies with the aid of suitable molecular biology tools. Some applications for yeast cultures include synthesis of protein expression systems, the study of specific gene or protein functions, and the analyses of novel protein interactions.



YEAST MEDIA OPTIONS


1. YPD medium
A nutritious medium available in liquid (broth) or solid (agar) forms for the growth and propagation of yeast cultures. It primarily contains of bacteriological peptone, yeast extract, and glucose. This medium is non-selective for Candida, Pichia, Saccharomyces, and Zygosaccharomyces.

2. Yeast Synthetic Drop-out Medium Supplements
The selection of plasmids in yeast is usually based on the use of auxotrophic mutant strains, which cannot grow without a specific medium component (like an amino acid, purine, or pyrimidine). Transformation with a plasmid containing the mutated gene enables the transformant to grow on a medium lacking the required component. Thus, drop-out medium supplements can be used to select transformed yeast cultures.
Please refer to the selection guide below for further details.

3. Yeast Nitrogen Base (YNB with or without amino acids)
Yeast Nitrogen Base is a highly-referenced growth medium used for the cultivation of yeast. This nutrient-rich microbial medium contains nitrogen, vitamins, trace elements, and salts. It is suitable for use in classifying yeasts based on amino acid and carbon requirements. With an added carbon source, YNB with amino acids can be used for susceptibility testing of fungi.





Source

Aug 3, 2022

Painting with Yeast Part 3

 black agar with charcoal




 white agar with titanium oxide. 




Jul 28, 2022

Painting with Yeast Part 2

First experience painting with yeast. The palette below showed the color in different stages.
The one on the left was prepared the day before, while the right side was done a couple of week before.


We started drawing on pieces of paper to have a reference.






Here is another template,  interestingly enough when the yeast is placed on the petridish is not visibile.




* The petri dishes with yeast were placed in a container that was 30 degree celsius. It will take about a week to see results.



RESULTS
After 3 days the colors started changing and it was removed from the temperature regulated container.
The images below are the results after a week.




*********

Not my petri dish but something interesting happened during the fermentation process. A fly came in the container and walked over the the petri dish below making a collaboration with nature even better.

Image below by Karen Ingram & Beth Tuck @ Genspace





 

Jul 12, 2022

Painting with Yeast Part 1

 

Sir Alexander Fleming was awarded the 1945 Nobel Prize in Physiology or Medicine for his discovery (in the late 1920s) of the antibiotic penicillin. In addition to being an accomplished microbiologist, Dr. Fleming was one of the first to explore microbial art by creating “germ paintings” using living bacteria.

According to Adams and Hendry (2002):

“In microbiology, Alexander Fleming has achieved immortality through his discovery of penicillin but his artistic side is perhaps less well known. He was a lifelong member of the Chelsea Arts Club, a private club for artists of all genres, founded in 1891 at the suggestion of the painter Whistler.


Even in Fleming’s time this technique failed to receive much attention or approval. Apparently he prepared a small exhibit of bacterial art for a royal visit to St Mary’s by Queen Mary. The Queen was not amused and hurried past it even though it included a patriotic rendition of the Union Jack in bacteria.”

*****The colour images were kindly provided by Kevin Brown of the Alexander Fleming Laboratory Museum (Imperial College Healthcare NHS Trust).


Currently the  American Society of Microbiology Agar Art contest run a contest of yeast painting.

The 2017 first-place winner of the American Society for Microbiology Agar Art competition, entitled “Sunset at the End,” by Jasmine Temple, Jef Boeke, PhD, Michael Shen, and Leslie Mitchell, PhD. This piece is composed of Saccharomyces cerevisiae yeast and was printed using nanodroplets of media containing yeast with pigment encoding plasmids on a large agar plate.

***the example above was done with The Echo 650 Liquid Handler is a high-precision lab equipment for scientific research labs



source

yeast art

Dextrose instead of sugar

  The pellicle grew nicely BUT the dextrose measurement * might not be the same as the sugar*  measurement.  Given that the structure is dif...